If you'd like to break up the icons in your Dock into groups, you can insert invisible spacers, much like the blank spaces which you can put into toolbars:

[robg adds: I tried this in 10.4, but it's definitely a 10.5-only hint, and it works as described -- the image above is from my machine. It seems this ancient hint can finally be retired (though the spacers are a bit wider than I would prefer, if I actually used the Dock much).]
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